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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22016280_22016399_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
22016280 - 22016399
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CACCTTCCCCAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGGTTCTGACCA
Flanking Amino Acid:
ARIYIYPDKLGSETTDALPE
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
90.9
28.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
58.8
0.2
1
56
33.6
Minor 5ss
41.2
-1
2.9
52.2
44.4
Minor BPS
52.4
0.07
1.8
64.45
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010545
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011093
22015884 - 22025835
9952