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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22016482_22016702_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22016482 - 22016702
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TCTCCCTTCACA
Flanking Amino Acid:
FWEALNNFTNEDRSRFLRFV
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.6
30.3
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
81
0.7
0.7
75.4
26.7
Minor 5ss
27.7
-2.6
3
31.2
36.9
Minor BPS
67.9
0.56
1.8
76.69
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010545
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011093
22015884 - 22025835
9952