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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22017904_22018270_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22017904 - 22018270
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAGGG
5'SS Class:
major
3'SS Sequence:
CTCACCTGGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
ATCTCTCTAACA
Flanking Amino Acid:
KDFPAVDSVLVKLLEVMEVM
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
58.6
40.6
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
60.8
0.24
1.1
57
38.5
Minor 5ss
24.5
-2.9
3.1
26.1
39
Minor BPS
65.1
0.47
1.7
74.29
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010545
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011093
22015884 - 22025835
9952