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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22019770_22020071_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22019770 - 22020071
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TGGTTCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAG
U12 Branch Point Sequence:
TGGTTCTCCACA
Flanking Amino Acid:
SDKFEKPLDYRWPLRYDQWW
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
48.8
-0
1.5
57.1
41.8
Major PPT
75
0.56
0.9
69
37.2
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
49.3
-0
2
63.78
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010545
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011093
22015884 - 22025835
9952