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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22026960_22027036_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22026960 - 22027036
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ACGTCTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
TCTTCCCTGACC
Flanking Amino Acid:
RWLVTCATEVGVRALVSILQ
Intron Amino Acid Position:
752

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
76.3
0.59
0.9
69.6
36.1
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
69.3
0.59
1.7
78.82
36.8

Associated Gene:

Gene:
ZSWIM5
Ensembl Gene ID:
ENSAPLG00000009826
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010278
22025674 - 22092016
66343