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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22029202_22030242_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22029202 - 22030242
Intron Length:
1041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTGCA
5'SS Class:
major
3'SS Sequence:
GTTTGCCCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CGGCTCTGACGT
Flanking Amino Acid:
LAYKLALRAMRLPVLETTAP
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
67.1
38.4
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
78.7
0.65
0.9
74.4
36.5
Minor 5ss
27.9
-2.5
3.1
33.2
41.8
Minor BPS
40.5
-0.6
1.9
50.09
43.7

Associated Gene:

Gene:
ZSWIM5
Ensembl Gene ID:
ENSAPLG00000009826
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010278
22025674 - 22092016
66343