About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22031037_22031469_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22031037 - 22031469
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCGGGT
5'SS Class:
major
3'SS Sequence:
CCCCTTCTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
ACTCCCCTAACC
Flanking Amino Acid:
LEEENCLEISDTGDSKPPVY
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.2
60.4
44.3
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
75.9
0.58
0.8
67.8
32.3
Minor 5ss
42.6
-0.8
3.5
64.5
46.9
Minor BPS
62.9
0.38
1.7
71.38
39.3

Associated Gene:

Gene:
ZSWIM5
Ensembl Gene ID:
ENSAPLG00000009826
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010278
22025674 - 22092016
66343