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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22032217_22033913_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22032217 - 22033913
Intron Length:
1697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
CCTTGCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
CTGTGCTCAGCC
Flanking Amino Acid:
FNSQGQPLWLEHVPTACARV
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
76.5
39.2
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
79.7
0.67
0.8
72.8
32
Minor 5ss
44.4
-0.6
2.9
62
42.6
Minor BPS
45.8
-0.3
2.2
58.23
46.6

Associated Gene:

Gene:
ZSWIM5
Ensembl Gene ID:
ENSAPLG00000009826
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010278
22025674 - 22092016
66343