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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22034091_22036368_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22034091 - 22036368
Intron Length:
2278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TCCTGCTGATGT
Flanking Amino Acid:
ALTQSSSHNQDSLARPRRTV
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.5
31.6
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
31.6
-2.1
3.2
38.8
46.5
Minor BPS
42.3
-0.5
2.3
59.91
49.3

Associated Gene:

Gene:
ZSWIM5
Ensembl Gene ID:
ENSAPLG00000009826
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010278
22025674 - 22092016
66343