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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22048224_22091267_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22048224 - 22091267
Intron Length:
43044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
CTGATGTCATCT
Flanking Amino Acid:
GHYSLLCWPQGFHLSGTVTE
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
70.2
37.7
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
85.1
0.79
0.7
77.2
31.5
Minor 5ss
27.6
-2.6
2.7
23.8
36.9
Minor BPS
39.5
-0.7
2.3
55.9
46.4

Associated Gene:

Gene:
ZSWIM5
Ensembl Gene ID:
ENSAPLG00000009826
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010278
22025674 - 22092016
66343