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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_220887_224342_R

Intron Information:

Intron Rank:
140310
Intron Class:
major
Intron Phase:
Intron Coordinates:
220887 - 224342
Intron Length:
3456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTACCTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATTTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
71.2
34.6
Major BPS
100
1.24
0.5
100
0
Major PPT
72.4
0.5
1
66.2
40
Minor 5ss
24.3
-3
3.1
28.4
43.8
Minor BPS
59.2
0.37
2
79.64
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022860
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040539
167573 - 224469
56897