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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22130818_22132203_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22130818 - 22132203
Intron Length:
1386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCAGC
5'SS Class:
major
3'SS Sequence:
TGGTGTGTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAC
U12 Branch Point Sequence:
TTTGAGTTAACC
Flanking Amino Acid:
ASYLEYAFKKCKRENCKLRD
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
64.9
41.1
Major BPS
65.7
0.39
1.1
67.4
36.7
Major PPT
71.4
0.48
1.1
61.5
48.6
Minor 5ss
34.4
-1.8
2.9
39.9
40.3
Minor BPS
55.2
0.14
2.3
75.23
41.5

Associated Gene:

Gene:
TOE1
Ensembl Gene ID:
ENSAPLG00000007214
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007480
22130366 - 22133849
3484