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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22132373_22132845_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22132373 - 22132845
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTACAG
U12 Branch Point Sequence:
TCTCTCTTTCTC
Flanking Amino Acid:
NNVPVCEKFSAYGWCPNGVK
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
81.8
31.8
Major BPS
41.5
-0.5
1.5
48.6
45.1
Major PPT
81.8
0.71
0.6
81.4
23.7
Minor 5ss
36.5
-1.5
2.7
46.6
41.8
Minor BPS
39.2
-0.8
3.5
58.92
40.6

Associated Gene:

Gene:
TOE1
Ensembl Gene ID:
ENSAPLG00000007214
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007480
22130366 - 22133849
3484