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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22139642_22141741_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22139642 - 22141741
Intron Length:
2100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAG
U12 Branch Point Sequence:
TCTTCTTCCACT
Flanking Amino Acid:
NLDNNERKPKGSIEKGPGVK
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
29.3
Major BPS
63.3
0.33
1.6
73.3
39.1
Major PPT
78.8
0.65
0.8
77.7
29.9
Minor 5ss
36.6
-1.5
3.4
52
45.2
Minor BPS
58.4
0.34
2
79.65
42.8

Associated Gene:

Gene:
TESK2
Ensembl Gene ID:
ENSAPLG00000007216
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007499
22138509 - 22203792
65284