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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22145507_22146607_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22145507 - 22146607
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTGTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCACAT
U12 Branch Point Sequence:
TTTGTTTGTACA
Flanking Amino Acid:
ADPDYLPRTENFGLDYDAFQ
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
65.3
0.38
1.1
72.6
33.1
Major PPT
84.1
0.77
0.9
79.9
37.7
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
48.9
-0
1.9
66.93
39.6

Associated Gene:

Gene:
TESK2
Ensembl Gene ID:
ENSAPLG00000007216
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007499
22138509 - 22203792
65284