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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22146692_22148330_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22146692 - 22148330
Intron Length:
1639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTACG
5'SS Class:
major
3'SS Sequence:
TTTTTCCTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CATAGCTGAACC
Flanking Amino Acid:
VLRDEPYNEKADVFSYGIIL
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
67.4
43.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
84.1
0.77
0.7
77.9
30.9
Minor 5ss
31
-2.2
2.7
34.9
41
Minor BPS
49.3
-0
2
61.37
43.4

Associated Gene:

Gene:
TESK2
Ensembl Gene ID:
ENSAPLG00000007216
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007499
22138509 - 22203792
65284