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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22150420_22158307_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22150420 - 22158307
Intron Length:
7888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGTCT
5'SS Class:
major
3'SS Sequence:
GTTTTCCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CAGACAATAACA
Flanking Amino Acid:
GIFHRDLTSKNCLIKHDENG
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.2
64.2
42.6
Major BPS
100
1.24
0.5
100
0
Major PPT
80.6
0.69
0.8
78
30.8
Minor 5ss
43.8
-0.7
3.4
65.8
45.3
Minor BPS
46.6
-0.2
1.9
55.83
42.4

Associated Gene:

Gene:
TESK2
Ensembl Gene ID:
ENSAPLG00000007216
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007499
22138509 - 22203792
65284