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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22158455_22177038_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22158455 - 22177038
Intron Length:
18584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATTAATCAATT
Flanking Amino Acid:
HQGQLHALTEYINYGNLEQL
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
90.6
0.91
0.7
88.7
28.3
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
49.1
0.01
1.9
70.78
39.5

Associated Gene:

Gene:
TESK2
Ensembl Gene ID:
ENSAPLG00000007216
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007499
22138509 - 22203792
65284