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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22177088_22185803_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22177088 - 22185803
Intron Length:
8716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACTAC
5'SS Class:
major
3'SS Sequence:
TTGTTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAAAAAA
U12 Branch Point Sequence:
AAAGCCCAAACC
Flanking Amino Acid:
MNRLSHPNILRFMGVCVHQG
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
64.4
36.5
Major BPS
44.4
-0.3
1.1
45.6
33.7
Major PPT
85.2
0.79
0.7
81.6
30.5
Minor 5ss
49.6
-0
2.6
66.9
44.7
Minor BPS
45.8
-0.3
2
55.76
42

Associated Gene:

Gene:
TESK2
Ensembl Gene ID:
ENSAPLG00000007216
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007499
22138509 - 22203792
65284