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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22227558_22228404_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22227558 - 22228404
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGGTTT
5'SS Class:
major
3'SS Sequence:
CCCTATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTGTCCCTATTT
Flanking Amino Acid:
TPTTPLNSVLATTNSSQLGP
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
75.9
36
Major BPS
73.9
0.59
1
81
30.2
Major PPT
81.3
0.7
0.8
75.5
32.5
Minor 5ss
37.7
-1.4
3.5
56.2
48
Minor BPS
59.1
0.36
2
80.54
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007235
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007502
22227299 - 22229710
2412