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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22247429_22247759_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22247429 - 22247759
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TTTCCCATGAGT
Flanking Amino Acid:
VSHHLSGVKEKFPDQKVDII
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
84.2
0.77
0.8
79.4
32.6
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
57.7
0.32
2
82.16
39

Associated Gene:

Gene:
MMACHC
Ensembl Gene ID:
ENSAPLG00000007238
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035469
22247207 - 22248655
1449
ENSAPLT00000007507
22247137 - 22248655
1519