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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22268093_22269012_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22268093 - 22269012
Intron Length:
920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTATCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
ATGTTCTTATCA
Flanking Amino Acid:
AFQFTDKHGEVCPAGWKPGS
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
81.3
0.7
0.9
78
34.9
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
66
0.5
1.6
73.13
39

Associated Gene:

Gene:
PRDX1
Ensembl Gene ID:
ENSAPLG00000007243
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007523
22268007 - 22271076
3070