About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22269144_22269945_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22269144 - 22269945
Intron Length:
802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGC
5'SS Class:
major
3'SS Sequence:
TCTGTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TCTTTCAAAACC
Flanking Amino Acid:
VLKEDEGIAYRGLFIIDEKG
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
66.7
39.8
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
81.7
0.71
0.8
77
31.6
Minor 5ss
37.1
-1.5
3.3
50.7
45.8
Minor BPS
54.7
0.13
2
70.45
41.2

Associated Gene:

Gene:
PRDX1
Ensembl Gene ID:
ENSAPLG00000007243
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007523
22268007 - 22271076
3070