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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22270069_22270322_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22270069 - 22270322
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TCCTACTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTTCTTAATA
Flanking Amino Acid:
SVDSHFCHLAWINTPKKQGG
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
80.7
31.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
77.2
0.61
0.8
69.2
36.6
Minor 5ss
38.2
-1.3
3.1
49.9
40.6
Minor BPS
87.5
1.17
0.8
90.77
23.3

Associated Gene:

Gene:
PRDX1
Ensembl Gene ID:
ENSAPLG00000007243
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007523
22268007 - 22271076
3070