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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22287536_22289139_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22287536 - 22289139
Intron Length:
1604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTAAAT
U12 Branch Point Sequence:
CTTTTCTTAAAG
Flanking Amino Acid:
AFQESVGPNKVVKREDLFVT
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
58.4
0.21
1.2
65
38.7
Major PPT
80.8
0.69
1
82.2
27.1
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
71
0.52
1.5
72.05
40.8

Associated Gene:

Gene:
AKR1A1
Ensembl Gene ID:
ENSAPLG00000007260
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007570
22278261 - 22298088
19828