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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22289292_22292016_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22289292 - 22292016
Intron Length:
2725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TTTGACGCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
CTTTCTTTGACG
Flanking Amino Acid:
LYLMHWPHAFERGDNLFPKN
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.5
37.3
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
69.5
0.44
0.9
63
39.3
Minor 5ss
36.6
-1.5
3.3
47.2
42.3
Minor BPS
74.5
0.62
1.3
74.14
38.7

Associated Gene:

Gene:
AKR1A1
Ensembl Gene ID:
ENSAPLG00000007260
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007570
22278261 - 22298088
19828