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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22293032_22293190_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22293032 - 22293190
Intron Length:
159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGAAC
5'SS Class:
major
3'SS Sequence:
TCCCTTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACAGAA
U12 Branch Point Sequence:
TCCCTTTCAACA
Flanking Amino Acid:
YSKSPAQIILRWQVQRKVVT
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
66.5
39
Major BPS
47.9
-0.1
0.9
42.3
29.1
Major PPT
76.3
0.59
0.8
72.6
30.8
Minor 5ss
30.8
-2.2
3.4
42.1
44.9
Minor BPS
52.2
0.06
1.5
60
40.4

Associated Gene:

Gene:
AKR1A1
Ensembl Gene ID:
ENSAPLG00000007260
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007570
22278261 - 22298088
19828