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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22293264_22294282_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22293264 - 22294282
Intron Length:
1019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGGTTATTAAAC
Flanking Amino Acid:
TPARILQNVQVFDFSLTEEE
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.2
1.14
0.6
93.2
14.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
84
0.76
0.8
76.9
37.3
Minor 5ss
43.8
-0.7
2.8
58.1
46.5
Minor BPS
55.7
0.16
1.7
65.42
39.6

Associated Gene:

Gene:
AKR1A1
Ensembl Gene ID:
ENSAPLG00000007260
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007570
22278261 - 22298088
19828