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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22294370_22298022_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22294370 - 22298022
Intron Length:
3653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAATTTC
5'SS Class:
major
3'SS Sequence:
GTTTACTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GTTTACTTCACA
Flanking Amino Acid:
NWRYIVPMITVNGKPVPRDA
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
75.9
34.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
79
0.65
0.9
72.5
37.4
Minor 5ss
44.6
-0.6
2.9
61.8
43
Minor BPS
63.4
0.41
2
77.36
39.2

Associated Gene:

Gene:
AKR1A1
Ensembl Gene ID:
ENSAPLG00000007260
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007570
22278261 - 22298088
19828