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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22300389_22301353_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22300389 - 22301353
Intron Length:
965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGGCCG
5'SS Class:
major
3'SS Sequence:
CTGTCCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CGATGCTGACGC
Flanking Amino Acid:
CVEPASASPTRMEEELAAPS
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
57.9
46.7
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
79.7
0.67
0.8
73.3
31.6
Minor 5ss
29.7
-2.3
3.4
38.8
46.5
Minor BPS
38.6
-0.8
2.2
44.36
43.4

Associated Gene:

Gene:
NASP
Ensembl Gene ID:
ENSAPLG00000004941
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005157
22300327 - 22310918
10592