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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22301405_22301940_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22301405 - 22301940
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GATTTTCTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TGCATCTGATTT
Flanking Amino Acid:
APSTSADKADGMDVDGESKK
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
38.7
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
74.1
0.54
0.9
66.4
40.4
Minor 5ss
26.1
-2.7
2.9
22.8
37.4
Minor BPS
46.9
-0.1
1.7
61.77
42.4

Associated Gene:

Gene:
NASP
Ensembl Gene ID:
ENSAPLG00000004941
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005157
22300327 - 22310918
10592