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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22302681_22303241_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22302681 - 22303241
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTAC
5'SS Class:
strong_major
3'SS Sequence:
TTATTCCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
AACCTCTTATTC
Flanking Amino Acid:
YYGKSLLELARMENGVLGNA
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71
35.7
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
80.5
0.69
0.7
78.9
29.7
Minor 5ss
50.9
0.03
2.4
66.9
44.7
Minor BPS
49.4
-0
1.5
54.79
37.4

Associated Gene:

Gene:
NASP
Ensembl Gene ID:
ENSAPLG00000004941
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005157
22300327 - 22310918
10592