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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22303340_22306297_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22303340 - 22306297
Intron Length:
2958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTCATC
Flanking Amino Acid:
EDDSALPAADETEESEEEDK
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
77.7
31.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78.7
0.65
0.8
70.5
35.6
Minor 5ss
41.3
-1
2.5
47.2
43.7
Minor BPS
55.7
0.16
2
71.1
40.7

Associated Gene:

Gene:
NASP
Ensembl Gene ID:
ENSAPLG00000004941
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005157
22300327 - 22310918
10592