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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22306381_22307127_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22306381 - 22307127
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
CGTGCGTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TATCAACTAACA
Flanking Amino Acid:
KENELTVEDKSLQESEEEEI
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
67.6
0.4
1
57.7
43.2
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
47.5
-0.1
2.1
66
39

Associated Gene:

Gene:
NASP
Ensembl Gene ID:
ENSAPLG00000004941
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005157
22300327 - 22310918
10592