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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22307409_22308428_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22307409 - 22308428
Intron Length:
1020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTCCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTGTTTGTAAAG
Flanking Amino Acid:
LKLGEVSIESENYVQAIEEF
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.5
41.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
75.6
0.58
0.8
69.4
31.4
Minor 5ss
41.2
-1
2.9
54.6
44.5
Minor BPS
48.3
-0.2
2.1
59.4
43

Associated Gene:

Gene:
NASP
Ensembl Gene ID:
ENSAPLG00000004941
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005157
22300327 - 22310918
10592