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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22308618_22308863_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22308618 - 22308863
Intron Length:
246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TATGTCGTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
TTTGCCCTAATA
Flanking Amino Acid:
KSVEVIDKRMAMLTERIKKS
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.5
38.7
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
71.5
0.48
1
62.6
43.9
Minor 5ss
26.2
-2.7
2.9
22.7
37.4
Minor BPS
67.1
0.53
1.8
79.96
36.4

Associated Gene:

Gene:
NASP
Ensembl Gene ID:
ENSAPLG00000004941
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005157
22300327 - 22310918
10592