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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22309492_22309580_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22309492 - 22309580
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCGA
5'SS Class:
major
3'SS Sequence:
TGTTTTGTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
TGTTTTGTAATA
Flanking Amino Acid:
QSEDSGSVSTIPVRKAADGA
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
63
43.3
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
73.1
0.52
1
69.9
40.3
Minor 5ss
35.8
-1.6
2.9
46.9
42.5
Minor BPS
56.5
0.2
2
70.9
36

Associated Gene:

Gene:
NASP
Ensembl Gene ID:
ENSAPLG00000004941
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005157
22300327 - 22310918
10592