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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22316420_22316644_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22316420 - 22316644
Intron Length:
225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTAAAACT
Flanking Amino Acid:
LKEFQIKSEQRRRNGFGKNG
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
84
28
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.3
0.79
0.8
80
32
Minor 5ss
53.1
0.1
2.3
69.7
41.2
Minor BPS
53
0.17
1.9
76.89
39.8

Associated Gene:

Gene:
GPBP1L1
Ensembl Gene ID:
ENSAPLG00000005350
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005565
22316224 - 22331902
15679