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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22317730_22318506_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22317730 - 22318506
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGATCA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTACAC
U12 Branch Point Sequence:
TGGTCTGTACAC
Flanking Amino Acid:
ENRECDKLDDMESNSTPEPK
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
73.4
31.4
Major BPS
57.7
0.19
1.2
66.7
40
Major PPT
92.8
0.96
0.5
93.3
15.6
Minor 5ss
40.7
-1
3
53.4
43.5
Minor BPS
43.7
-0.4
2.2
55.68
42.9

Associated Gene:

Gene:
GPBP1L1
Ensembl Gene ID:
ENSAPLG00000005350
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005565
22316224 - 22331902
15679