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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22318666_22321044_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22318666 - 22321044
Intron Length:
2379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTGTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAA
U12 Branch Point Sequence:
ACTGTTTAAAGT
Flanking Amino Acid:
SGSVLTSPKESPSSTTPPIE
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.1
31
Major BPS
72.6
0.56
1.2
75.9
36.3
Major PPT
78.6
0.64
0.9
72.8
37.5
Minor 5ss
30.9
-2.2
3.6
45.9
49.3
Minor BPS
45.4
-0.2
2
60.39
44.3

Associated Gene:

Gene:
GPBP1L1
Ensembl Gene ID:
ENSAPLG00000005350
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005565
22316224 - 22331902
15679