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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22321186_22324533_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22321186 - 22324533
Intron Length:
3348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
CTTTTTAATACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTTTTTAATA
Flanking Amino Acid:
VPKPAAPPSKPSPWKANRNE
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.4
44.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.3
0.73
0.9
77.5
34.6
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
75.4
0.79
1.1
78
33.3

Associated Gene:

Gene:
GPBP1L1
Ensembl Gene ID:
ENSAPLG00000005350
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005565
22316224 - 22331902
15679