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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22329087_22329441_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22329087 - 22329441
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
GTTTCTTTATTT
Flanking Amino Acid:
FNNGPLRTAGDCWHQPSLLR
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
79.8
0.67
0.8
80.2
31.9
Minor 5ss
29.7
-2.3
2.6
33.7
41.6
Minor BPS
70.4
0.72
1.5
84.38
36.8

Associated Gene:

Gene:
GPBP1L1
Ensembl Gene ID:
ENSAPLG00000005350
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005565
22316224 - 22331902
15679