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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22329572_22330100_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22329572 - 22330100
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTATATTACTT
Flanking Amino Acid:
LNFSTPQSTKSPAATFEKHG
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1.1
87
30
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
88.8
0.87
0.7
84.2
30.7
Minor 5ss
42.9
-0.8
2.7
59.7
44.8
Minor BPS
49.5
0.04
1.9
71.79
39.3

Associated Gene:

Gene:
GPBP1L1
Ensembl Gene ID:
ENSAPLG00000005350
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005565
22316224 - 22331902
15679