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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_2233586_2268229_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2233586 - 2268229
Intron Length:
34644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTCCTGATTT
Flanking Amino Acid:
IPRIADLIGKKLPNFGPYLE
Intron Amino Acid Position:
875

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.1
0.77
0.8
82.9
32.8
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
63.9
0.51
1.7
81.89
39.5

Associated Gene:

Gene:
DPYD
Ensembl Gene ID:
ENSAPLG00000012045
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046083
2220811 - 2558897
338087
ENSAPLT00000022824
2220811 - 2563107
342297
ENSAPLT00000012599
2220811 - 2563107
342297