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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22356866_22357683_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22356866 - 22357683
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGAATG
5'SS Class:
strong_major
3'SS Sequence:
ATTTGCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCAGCCATGACC
Flanking Amino Acid:
RKARKYLYAVGGYTRLQGGR
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1.1
76.6
38.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
80.6
0.69
0.8
78.2
35.7
Minor 5ss
33.4
-1.9
2.9
40.7
45.1
Minor BPS
53
0.08
1.8
63.43
42.3

Associated Gene:

Gene:
IPP
Ensembl Gene ID:
ENSAPLG00000005658
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005877
22352874 - 22359000
6127