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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22357840_22358152_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22357840 - 22358152
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CCTTTTTTAATC
Flanking Amino Acid:
PAQRLLKYIEGIPDFSLRVA
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.8
0.74
0.9
88
22.6
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
68.5
0.56
1.2
68.66
38.1

Associated Gene:

Gene:
IPP
Ensembl Gene ID:
ENSAPLG00000005658
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005877
22352874 - 22359000
6127