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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22369428_22373443_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22369428 - 22373443
Intron Length:
4016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGACACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTATTTGACA
Flanking Amino Acid:
CKNKCIPYSEMYANGTDMCQ
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
66.5
0.37
1
59.2
40.7
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
67
0.53
1.5
75.01
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006104
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006337
22369191 - 22381221
12031