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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22379028_22380155_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22379028 - 22380155
Intron Length:
1128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTCAG
5'SS Class:
major
3'SS Sequence:
TCACCCACCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CATTTCTCACCC
Flanking Amino Acid:
YWNRCGQLSKSCEDFTKKIE
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.3
61.5
44.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
65.5
0.35
0.9
58.1
31.4
Minor 5ss
35.1
-1.7
2.9
41.9
39.1
Minor BPS
50.8
0.01
1.9
63.13
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006104
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006337
22369191 - 22381221
12031