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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22380256_22381082_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22380256 - 22381082
Intron Length:
827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAGTG
5'SS Class:
major
3'SS Sequence:
TCATTCCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AAATCCTTACTG
Flanking Amino Acid:
DMHECTLYSESSCCYANFTE
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
71.9
38
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
71.6
0.49
0.9
66.7
34.1
Minor 5ss
36.5
-1.5
3.6
52
44.9
Minor BPS
58.9
0.14
1.7
59.95
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006104
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006337
22369191 - 22381221
12031