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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_22472167_22512606_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22472167 - 22512606
Intron Length:
40440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CTCTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TATGCCTTATAA
Flanking Amino Acid:
KELSLPRRGSFCRTSNRKSL
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
72.7
38.1
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
89.5
0.89
0.6
87.9
22.1
Minor 5ss
37.7
-1.4
2.8
48.3
41.7
Minor BPS
57.9
0.25
1.8
69.95
42

Associated Gene:

Gene:
MAST2
Ensembl Gene ID:
ENSAPLG00000006200
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006479
22391224 - 22577548
186325
ENSAPLT00000045008
22438172 - 22577548
139377
ENSAPLT00000037078
22391224 - 22577548
186325